Pig Chromosomal DNA Barcode Information Pig Chromosomal DNA Barcode Information

( Sorting )	( Sorting )	( Sorting )	( Sorting )	-	-	( Sorting )	(F Primer Sorting) (R Primer Sorting)	( Sorting )	( Sorting )	( Sorting )	-	-
Gen Short Name	Full Name (UniSTS Code)	Chromosome Name	MARC Seq. Position(cM)	Gene Sequencing Start Point (bp)	Gene Sequencing End Point (bp)	Fragment Length (bp)	PCR Used F Primer R Primer	Annealing Temperature (℃)	Fragment Size (bp)	Related Genes and Phenotype Traits	Link NCBI	Sequence Number
SW552	UniSTS:251988	1	9.1	5260843	5260952	110	AAGAGCCAGATGGGGAGG ACTGATAAGACATGCTGTGTGC	60	112-146	Early growth rate	NCBI	1
SW2185	UniSTS:252883	1	67.6	73990528	73990698	171	CCCAACCCATTATGATGCAG AGGATGTTATTCTTAACTCATCTGG	55	145-175	Marbling; Last lumbar backfat	NCBI	2
SW780	UniSTS:252055	1	81.0	126505160	126505285	126	TCTACCAGCTAAATTGCTCACTG TAGGACCTGGAATATACTCCCTG	62	116-136	BFTR(Back fat at rump)	NCBI	3
RLN	UniSTS:252354	1	83.7	136181910	136182095	186	CCAAAGGACAGAGACCTATGACTG TAGGTTCTCCCCTTTGGTGAAGTT	60	181-185	Relaxin	NCBI	4
SW974	UniSTS:252064	1	102.9	158592899	158593043	145	GGTGAAGTTTTTGCTTTGAACC GAAAGAAATCCAAATCCAAACC	58	126-168	Marbling; Birth weight; Average daily gain between weaning and slaughter; Carcass length; Linoleic acid	NCBI	5
SW705	UniSTS:252045	1	122.6	-	-	-	CTGAAGTCTTGAGATGAAACGC TGTAGAGCATTTCAGAGGAAGC	62	145-163	Total Vertebra number; Longissimus muscle length; Last-rib back fat; Last lumbar backfat	NCBI	6
SW1301	UniSTS:252355	1	140.5	-	-	-	TGGATAAGCAATGAGGTCCC TAGTGGATTTATAATGTGCTAACCC	58	144-176	Average daily gain (3-10 weeks); Last-rib back fat; Body weight at 3, 13, 17 weeks of age	NCBI	7
SWR2516	UniSTS:252993	2	0.0	-	-	-	GTGCATTATCGGGAGGTATG ACCCTGTATGATACTGTAACTCTGG	60	154-168	-	NCBI	8
SW1883	UniSTS:252859	2	72.4	-	-	-	CCATTTGGGGTCATTTTTTG CTATTGGTGGTAAAGGAGCAGC	58	142-158	MCOLORL(Hormel loin Minolta)	NCBI	9
SWR2157	UniSTS:252984	2	89.2	-	-	-	ATCAGTACTTTTAGCAATGATAGCC AAAGAGACTTAAGGTTCCCCAG	60	106-127	DRIPL(drip loss)	NCBI	10
SW833	UniSTS:252057	3	17.3	-	-	-	CTGACTGTTTTGCTGCAGTG TCCACTGAGGTCTCTCACTCTC	60	171-183	24 hr pH of Carcass	NCBI	11
IL1B	UniSTS:252434	3	53.7	-	-	-	AATGCAACAGGTGTGGGC CCACACCAGAAGTGCATTTG	60	114-118	Prointerleukin-1 beta	NCBI	12
APOB	UniSTS:252349	3	96.8	-	-	-	TGTATGACTGGATCACTGTGC CATCAAACTGTACTCAGGATGT	60	173-175	Apolipoprotein B gene (Lpb)	NCBI	13
SW1327	UniSTS:252450	3	109.6	-	-	-	AGCTCTTGAAGCTCAAAGACG CATACTTCTCCAGGAGGAAAGC	58	127-149	-	NCBI	14
SWR2096	UniSTS:252806	3	129.3	-	-	-	AGGTGTGGGCCTCTGTACAC GATCTTCCCTCCCCTCCC	58	110-124	-	NCBI	15
SW2404	UniSTS:252592	4	0.0	-	-	-	TGACAGCCTCCTGGTTCC AGCTGTCGTTGTTTTTCTCTCC	62	132-178	WHC(water holding capacity)	NCBI	16
SW317	UniSTS:251883	4	53.5	46533337	46533488	152	GGGATGCTAAAGTTGGAGGG TTAGTGTCCTGGGCAAGGAG	62	154-168	Glycosphingolipid microdomains 1	NCBI	17
SW35	UniSTS:251902	4	55.9	50164531	50164666	136	TCAAGTTGGAGAGTCTGAGGC AAGACTGCCCACCAAATGAG	58	129-137	-	NCBI	18
SW839	UniSTS:252058	4	62.3	54908448	54908592	145	GGAAACCAGGATAACAGGAGG TAACCCACTGTACCACCAAGG	62	144-166	NCOA2(nuclear receptor coactivator 2); IMF(Intra-muscular fat)	NCBI	19
SW286	UniSTS:252192	4	78.3	78716224	78716297	74	GGTGACAGAATACAGTTTTCCC GATCTTCTTATTGGCCGTGTG	62	74-94	MCOLOR(Minolta, a); putative olfactory receptor 10K3	NCBI	20
SW856	UniSTS:252156	4	130.1	109206330	109206538	209	AGGGGGTGGGTGATTGTG AACTTCCCCATGCTGCTG	62	160-200	Carcass weight	NCBI	21
SW491	UniSTS:251953	5	31.5	504662	504834	173	TTTAAGCCACTGCACCAGG CAGGGAACTCCTCATAGTCCC	60	154-174	PRV(Resistance/susceptibility to pseudorabies); Last lumbar backfat	NCBI	22
DK	UniSTS:251896	5	72.3	8122323	8122455	133	CTATTCCCCATGAACCCATG TCCCAGTGGGAAAAAAAAGT	58	110-132	Diacylglycerol kinase; Silver	NCBI	23
SW967	UniSTS:252218	5	145.9	37298902	37299000	99	AGCAGACTGTTCATCTGTTCAG GGGGCAGCTGAAAAGTCC	58	95-115	MCOLORL(Hormel loin Minolta); Last-rib back fat; Average backfat; body weight at 3 and 13 weeks of age	NCBI	24
SW973	UniSTS:251997	6	18.6	-	-	-	CACAGTTTGCATTGTGGGTC TAGGGGGCCCGTAAAGTC	62	171-183	-	NCBI	25
SW2419	UniSTS:252602	6	161.4	-	-	-	AGGGCGTGCTCTTCTAACTG TGACTCAGCATCTCCTGCC	58	115-141	IMF(Intramuscular fat): Early growth rate	NCBI	26
SW607	UniSTS:251888	6	165.7	-	-	-	AGCACCTGGCACAGGATAAC GCAAGAACTGGTTTTCCAGC	58	152-172	Moisture Content	NCBI	27
SWR1343	UniSTS:252370	7	12.2	5863476	5863596	121	GATCTGGCATTCCATGTGC CTCCTAGCCTGGGAACCC	60	122-142	Carcass length; Average backfat	NCBI	28
SW1354	UniSTS:252456	7	22.3	-	-	-	GAGCCAGATTAATGCAGTTGC CCTAGTCCCGAGCGGTAATC	58	104-172	Average backfat; Hot carcass weight; Back fat thickness; Eye Muscle depth; Fat androstenone level at 100, 120, 140 and 160 days of age;	NCBI	29
SW252	UniSTS:251967	7	99.4	-	-	-	CTCTGGGTCCATCCATTTTG TTATGATGCAAAACATGGAAGC	62	149-179	MCOLOR; Average daily gain; Carcass length; Belly percentage; Thoracic Vertebra number; pH for Longissmus Dorsi	NCBI	30
SW905	UniSTS:252240	8	20.8	-	-	-	ATCCCAACCTTCTTTCAAAGG TCCAGTGGCAGAACAACATG	60	125-174	Early growth rate; Life growth rate; Loin and belly cut	NCBI	31
OPN	UniSTS:251897	8	120.2	-	-	-	CCAATCCTATTCACGAAAAAGC CAACCCACTTGCTCCCAC	58	100-166	Osteopontin (opn) gene, opn-[TG] repeat allele, promoter region	NCBI	32
SW1980	UniSTS:252715	8	126.1	-	-	-	GCTTCTGTATGCCACAGCTG CCCCCATTTGAACAATGAAG	62	174-200	-	NCBI	33
SW983	UniSTS:252123	9	4.0	-	-	-	GCAGTCCCACTCTTAGGTATATATCC ATAATGCTGCTATGAACACTGTAGTG	60	95-121	IMF(Intramuscular fat); Moisture	NCBI	34
SW21	UniSTS:252276	9	15.1	-	-	-	CGATTTTAATGTGCAGCCG CAGGAGCTGACCTATCTGGTG	60	123-140	-	NCBI	35
S0024	UniSTS:252330	9	27.4	-	-	-	AAAGAAGGAAAGAACTGATA ATGGAGGATAATGTGAAAAA	55	166-191	Leaf fat weight	NCBI	36
SW1349	UniSTS:252455	9	142.5	-	-	-	ATTTAATGTTTTCATTGTGCCG CTTACATGATGCCCAAACTGG	58	127-151	PRV(Resistance/susceptibility to pseudorabies)	NCBI	37
SW1041	UniSTS:252105	10	67.5	-	-	-	ATCAGAAAATGGTCAACAGTTCA GGAGAATTCCCAAAGTTAATAGG	58	94-103	Number of nipples; Early growth rate	NCBI	38
SW920	UniSTS:252062	10	86.3	-	-	-	CATGGAGCTGAACTTGCAAA ATCAAGCCCAACTTAAGAATACA	60	142-150	Number of nipples	NCBI	39
SWR67	UniSTS:251905	10	122.0	-	-	-	GTCCTCATGGAGACTAGTTGGG TCCATGCCATGGACACAG	60	125-147	-	NCBI	40
SW2067	UniSTS:252667	10	128.0	-	-	-	GAAGAAATTAAATGCACGTCCC TTGCTGCTTGTGCCTTTG	55	108-136	-	NCBI	41
SW1486	UniSTS:252476	11	7.8	6414540	6414631	92	CCCACTGTTTCTTACACATTGC ACTCCAAAGCCCACATTCTG	58	88-94	-	NCBI	42
SW2413	UniSTS:252599	11	84.9	-	-	-	AAAGACCGGGTCCTCCTG CATTCCATCCGCCCTACC	62	128-162	-	NCBI	43
S0143	UniSTS:252766	12	6.6	-	-	-	ACTCACAGCTTGTCCTGGGTGT CAGTCAGCAGGCTGACAAAAAC	58	148-162	FA-C18-3 Linolenic acid percentage	NCBI	44
SW943	UniSTS:252103	12	62.8	-	-	-	AGGAGGACTAGAGCGCCTG AGAGAGGCCAAGAATAGAACCC	62	118-132	FA-C18-3 Linolenic acid percentage	NCBI	45
SWC62	UniSTS:252284	12	84.2	-	-	-	CCAGGGTGTTGCTTTAGGTC GGCTCACCTTGGCACATG	58	142-162	Meat color score	NCBI	46
S0147	UniSTS:252637	12	89.9	-	-	-	AGCTGCAGCTCCAGATCATCT GCTGTAAGCAGAGATTAACAC	55	146-174	Meat color score; Meat chewiness	NCBI	47
LOX12A	UniSTS:252353	12	102.5	-	-	-	CTTCAATGGTGCAGTGGGTTG ACTTTAATCAGATACAGAAGTTGG	58	143-155	ALOX15(Arachidonate 15-lipoxygenase)	NCBI	48
SWR1021	UniSTS:252000	12	113.1	-	-	-	CGCCACAAGTGAACTCC CCGCGGGTCCAGCTATAG	60	91-118	-	NCBI	49
SW1378	UniSTS:252378	13	19.1	3641602	3641693	92	ACCACACGTCTAATTGAAGAGC TAAATCACAACTTTTGGGGATG	60	92-103	Transcribed locus	NCBI	50
SWR950	UniSTS:252215	13	69.6	36073974	36074131	158	CTCCATGTGCTGCAGGTG CCAAACACTCCCCTGCAC	62	145-163	GRAM domain-containing protein 1C	NCBI	51
SW520	UniSTS:251873	13	74.4	-	-	-	GCCACCGGTGTGACTCTAAA CTTTTCCCAAGTTCACTTAGCA	62	102-124	-	NCBI	52
SW2097	UniSTS:252871	13	121.2	-	-	-	TGACTTTGCTTAGCCTCTGTTC TTCCCTATGCTGCAGATGTG	62	106-132	-	NCBI	53
SW857	UniSTS:252180	14	7.4	6061240	6061392	153	TGAGAGGTCAGTTACAGAAGACC GATCCTCCTCCAAATCCCAT	58	145-159	Average backfat (ultrasound); MCOLOR-A; Drip loss; Bone morphogenetic protein 1 precursor (BMP-1)	NCBI	54
SW2515	UniSTS:252787	14	108.7	135413038	135413137	100	CCATCTCATCCAGAAACATCC AGGATGCTGAGGTGTTAGGC	60	90-108	-	NCBI	55
KS169	UniSTS:253282	15	3.0	-	-	-	GGTGATAGGGACTTTCCAAGC TTACTGGGTTGGGAGGAGG	60	166-182	-	NCBI	56
KS135	UniSTS:253234	15	102.5	-	-	-	AGCAGTAACTCTTTATCTTCATGCC TTAAGAATAGTTCTGGGCAGGG	58	118-146	Ovulation rate	NCBI	57
SWR312	UniSTS:251919	15	119.9	-	-	-	ATCCGTGCGTGTGTGCAT CTGGTGGCTACAGTTCCGAT	60	127-141	-	NCBI	58
SW813	UniSTS:252203	16	6.0	-	-	-	AGTTGATTTAAAATGTTGTGCCA AATATTTCAAAAAAAGGAATGCG	58	98-110	-	NCBI	59
SW18	UniSTS:252274	16	93.2	-	-	-	TTGTTCCCCACGTTCCTG CTGGCCTGGGAACTACCC	55	88-99	-	NCBI	60
SWR1133	UniSTS:252342	17	30.4	-	-	-	TGGGATTTGTTACCACTGAGC TCCATGGGTGAAAAAAAGATG	62	131-135	Meat juiciness score	NCBI	61
SW2431	UniSTS:252606	17	94.0	-	-	-	CTTCCCAGGATGTTGTCTAAAC CATGGTGCACACTTAGTGGG	60	151-176	-	NCBI	62
SW1808	UniSTS:252551	18	0.0	-	-	-	CCAAAAAAGTGGACTGTAAGCC TACGGATGGATGGAGACAGG	60	106-149	-	NCBI	63
SW1023	UniSTS:252258	18	5.0	-	-	-	AACCTGCTGAGCCACAGTG GCAAGTACCCAATCTTTTTTCC	60	90-132	Drip loss	NCBI	64
SW787	UniSTS:252202	18	31.6	-	-	-	CTGGAGCAGGAGAAAGTAAGTTC GGACAGTTACAGACAGAAGAAGG	60	150-165	Drip loss; Cook loss (%); pH 24 hours, in semi-membranous muscle	NCBI	65
S0062	UniSTS:252012	18	43.5	-	-	-	AAGATCATTTAGTCAAGGTCACAG TCTGATAGGGAACATAGGATAAAT	55	146-196	Myristic acid	NCBI	66
SWR17	UniSTS:252162	XY	1.1	-	-	-	GTTTAAGCCACCTGGTCTATGG ATCCTGACTTGCTTATGGCTG	58	143-155	-	NCBI	67
SW1325	UniSTS:252364	XY	2.2	-	-	-	CATTCATTTTTGTTCTTCTGCC CACACCTTCGTCTTCACTTCC	58	119-153	-	NCBI	68
SW1411	UniSTS:252386	XY	2.2	-	-	-	GCCAAGGGATTTTTCACATG ATGACCTGGCTGTGAAAAGC	60	78-90	-	NCBI	69
SW2156	UniSTS:252741	XY	2.4	-	-	-	CAAGTGCCCATCAACACTTG TCATCTCTGGGTCCATCTACG	60	157-191	-	NCBI	70
SW980	UniSTS:252243	XY	11.9	-	-	-	CTTCAGTGTAGTCCAAGTGGC GATGTTTTGCTGATAGGAAGGG	55	116-132	-	NCBI	71
SW2470	UniSTS:252615	XY	45.8	-	-	-	TAGTACCTAGGCTTCCCCAGG CTTTGTCTCTCCCTCTCCATAC	58	152-170	Loin eye area; Carcass length	NCBI	72
SW1522	UniSTS:252542	XY	55.4	30676678	30676843	166	CTACCCTCCCAGAGTACCCC TAGCACCTTTCTTTTCATTCCC	60	164-168	Average backfat; Loin eye area; Trimmed whole-sale product / live weight	NCBI	73
SW1426	UniSTS:252393	XY	71.7	-	-	-	TGGTTGTCACAGTTTATTGGG TCCCTATCTTCTAAATGCTAGTAGG	60	90-102	Last lumbar backfat; Trimmed whole-sale product / live weight; Plasma FSH concentration	NCBI	74
SY11	UniSTS:253167	XY	73.0	17876119	17876283	165	TTCACAGCATGACAAAATAGGG TTCAGTCCACCAGAGTTCCC	55	157-169	Androgen receptor	NCBI	75
S0117	UniSTS:253068	XY	74.4	16001110	16001287	178	CAGGAAGCTGAAGCTGAGATTTGA CTGTCAGGGAGCTAGTTTCACTCA	58	163-185	-	NCBI	76
SW1943	UniSTS:252710	XY	87.4	-	-	-	ATTCCCCTTGACACATTAATGG TATGGCTGAGTAGTATTCCATTTTG	62	101-110	Average backfat; Intramuscular fat content; Trimmed whole-sale product / carcass weight; Plasma FSH concentration	NCBI	77
SN218	UniSTS:253121	XY	114.4	39182017	39182113	97	TGGGAACCTCCATATTCTGTG TGAATGCCTACCATGTGTTAGC	62	94-124	MCF.2 cell line derived transforming sequence	NCBI	78
SW2059	UniSTS:252587	XY	119.3	-	-	-	GCTGTCTGGCTTTGGACAG ACTAAGTTCCAGGCACTCAGAC	58	171-191	Trimmed whole-sale product / carcass weight	NCBI	79
SW2588	UniSTS:252917	XY	128.4	-	-	-	TGTCTTCTTCCCCCTCCC AAAGCCTGGTGAGGACCC	58	101-124	First rib, tenth-rib and last-rib back fat	NCBI	80

Pig Mitochondrial DNA Barcode Information Pig Mitochondrial DNA Barcode Information

Gen Short Name	Full Name (UniSTS Code)	Mitochondrial	DNA Sequence Start Point (bp)	DNA Sequence End Point (bp)	Fragment Length (bp)	DNA Fragment Size (bp)	NCBI Link
D-loop	D-loop	MT	1	1175	1175	1155-1335	NCBI
Repeat	tacacgtgcg Repeat region	MT	707	836	130	110-290	NCBI
tRNA-Phe	tRNA-Phe	MT	1176	1245	70	70	NCBI
12S rRNA	12S ribosomal RNA	MT	1246	2205	960	960	NCBI
tRNA-Val	tRNA-Val	MT	2206	2273	68	68	NCBI
16S rRNA	16S ribosomal RNA	MT	2274	3844	1571	1571	NCBI
tRNA-Leu	tRNA-Leu	MT	3845	3919	75	75	NCBI
ND1	NADH dehydrogenase subunit 1	MT	3922	4878	957	957	NCBI
tRNA-Ile	tRNA-Ile	MT	4877	4945	69	69	NCBI
tRNA-Gln	tRNA-Gln	MT	4943	5015	73	73	NCBI
tRNA-Met	tRNA-Met	MT	5017	5086	70	70	NCBI
ND2	NADH dehydrogenase subunit 2	MT	5087	6130	1044	1044	NCBI
tRNA-Trp	tRNA-Trp	MT	6129	6196	68	68	NCBI
tRNA-Ala	tRNA-Ala	MT	6203	6270	68	68	NCBI
tRNA-Asn	tRNA-Asn	MT	6272	6346	75	75	NCBI
tRNA-Cys	tRNA-Cys	MT	6379	6444	66	66	NCBI
tRNA-Tyr	tRNA-Tyr	MT	6444	6509	66	66	NCBI
COX1	cytochrome c oxidase subunit I	MT	6511	8055	1545	1545	NCBI
tRNA-Ser	tRNA-Ser	MT	8059	8129	71	71	NCBI
tRNA-Asp	tRNA-Asp	MT	8135	8202	68	68	NCBI
COX2	cytochrome c oxidase subunit II	MT	8203	8890	688	688	NCBI
tRNA-Lys	tRNA-Lys	MT	8891	8957	67	67	NCBI
ATP8	ATPase subunit 8	MT	8959	9162	204	204	NCBI
ATP6	ATPase subunit 6	MT	9120	9800	681	681	NCBI
COX3	cytochrome c oxidase subunit III	MT	9800	10583	784	784	NCBI
tRNA-Gly	tRNA-Gly	MT	10584	10652	69	69	NCBI
ND3	NADH dehydrogenase subunit 3	MT	10653	10998	346	346	NCBI
tRNA-Arg	tRNA-Arg	MT	11000	11068	69	69	NCBI
ND4L	NADH dehydrogenase subunit 4L	MT	11069	11365	297	297	NCBI
ND4	NADH dehydrogenase subunit 4	MT	11359	12736	1378	1378	NCBI
tRNA-His	tRNA-His	MT	12737	12805	69	69	NCBI
tRNA-Ser	tRNA-Ser	MT	12806	12864	59	59	NCBI
tRNA-Leu	tRNA-Leu	MT	12865	12934	70	70	NCBI
ND5	NADH dehydrogenase subunit 5	MT	12935	14755	1821	1821	NCBI
ND6	NADH dehydrogenase subunit 6	MT	14739	15266	528	528	NCBI
tRNA-Glu	tRNA-Glu	MT	15267	15335	69	69	NCBI
CYTB	cytochrome b	MT	15342	16481	1140	1140	NCBI
tRNA-Thr	tRNA-Thr	MT	16482	16549	68	68	NCBI
tRNA-Pro	tRNA-Pro	MT	16550	16613	64	64	NCBI