豬染色體基因條碼資訊 Pig Chromosomal DNA Barcode Information

(排序)	(排序)	(排序)	(排序)	-	-	(排序)	(F 引子排序) (R 引子排序)	(排序)	(排序)	(排序)	-	-
基因簡稱	全名 (UniSTS代號)	染色體 名號	MARC 位序(cM)	基因定序 啟始點(bp)	基因定序 末端點(bp)	片段長 (bp)	PCR所用 F 引子 R 引子	鍊合溫 (℃)	片段 大小(bp)	相關基因與外表性狀	NCBI 連結	序號
SW552	UniSTS:251988	1	9.1	5260843	5260952	110	AAGAGCCAGATGGGGAGG ACTGATAAGACATGCTGTGTGC	60	112-146	Early growth rate	NCBI	1
SW2185	UniSTS:252883	1	67.6	73990528	73990698	171	CCCAACCCATTATGATGCAG AGGATGTTATTCTTAACTCATCTGG	55	145-175	Marbling; Last lumbar backfat	NCBI	2
SW780	UniSTS:252055	1	81.0	126505160	126505285	126	TCTACCAGCTAAATTGCTCACTG TAGGACCTGGAATATACTCCCTG	62	116-136	BFTR(Back fat at rump)	NCBI	3
RLN	UniSTS:252354	1	83.7	136181910	136182095	186	CCAAAGGACAGAGACCTATGACTG TAGGTTCTCCCCTTTGGTGAAGTT	60	181-185	Relaxin	NCBI	4
SW974	UniSTS:252064	1	102.9	158592899	158593043	145	GGTGAAGTTTTTGCTTTGAACC GAAAGAAATCCAAATCCAAACC	58	126-168	Marbling; Birth weight; Average daily gain between weaning and slaughter; Carcass length; Linoleic acid	NCBI	5
SW705	UniSTS:252045	1	122.6	-	-	-	CTGAAGTCTTGAGATGAAACGC TGTAGAGCATTTCAGAGGAAGC	62	145-163	Total Vertebra number; Longissimus muscle length; Last-rib back fat; Last lumbar backfat	NCBI	6
SW1301	UniSTS:252355	1	140.5	-	-	-	TGGATAAGCAATGAGGTCCC TAGTGGATTTATAATGTGCTAACCC	58	144-176	Average daily gain (3-10 weeks); Last-rib back fat; Body weight at 3, 13, 17 weeks of age	NCBI	7
SWR2516	UniSTS:252993	2	0.0	-	-	-	GTGCATTATCGGGAGGTATG ACCCTGTATGATACTGTAACTCTGG	60	154-168	-	NCBI	8
SW1883	UniSTS:252859	2	72.4	-	-	-	CCATTTGGGGTCATTTTTTG CTATTGGTGGTAAAGGAGCAGC	58	142-158	MCOLORL(Hormel loin Minolta)	NCBI	9
SWR2157	UniSTS:252984	2	89.2	-	-	-	ATCAGTACTTTTAGCAATGATAGCC AAAGAGACTTAAGGTTCCCCAG	60	106-127	DRIPL(drip loss)	NCBI	10
SW833	UniSTS:252057	3	17.3	-	-	-	CTGACTGTTTTGCTGCAGTG TCCACTGAGGTCTCTCACTCTC	60	171-183	24 hr pH of Carcass	NCBI	11
IL1B	UniSTS:252434	3	53.7	-	-	-	AATGCAACAGGTGTGGGC CCACACCAGAAGTGCATTTG	60	114-118	Prointerleukin-1 beta	NCBI	12
APOB	UniSTS:252349	3	96.8	-	-	-	TGTATGACTGGATCACTGTGC CATCAAACTGTACTCAGGATGT	60	173-175	Apolipoprotein B gene (Lpb)	NCBI	13
SW1327	UniSTS:252450	3	109.6	-	-	-	AGCTCTTGAAGCTCAAAGACG CATACTTCTCCAGGAGGAAAGC	58	127-149	-	NCBI	14
SWR2096	UniSTS:252806	3	129.3	-	-	-	AGGTGTGGGCCTCTGTACAC GATCTTCCCTCCCCTCCC	58	110-124	-	NCBI	15
SW2404	UniSTS:252592	4	0.0	-	-	-	TGACAGCCTCCTGGTTCC AGCTGTCGTTGTTTTTCTCTCC	62	132-178	WHC(water holding capacity)	NCBI	16
SW317	UniSTS:251883	4	53.5	46533337	46533488	152	GGGATGCTAAAGTTGGAGGG TTAGTGTCCTGGGCAAGGAG	62	154-168	Glycosphingolipid microdomains 1	NCBI	17
SW35	UniSTS:251902	4	55.9	50164531	50164666	136	TCAAGTTGGAGAGTCTGAGGC AAGACTGCCCACCAAATGAG	58	129-137	-	NCBI	18
SW839	UniSTS:252058	4	62.3	54908448	54908592	145	GGAAACCAGGATAACAGGAGG TAACCCACTGTACCACCAAGG	62	144-166	NCOA2(nuclear receptor coactivator 2); IMF(Intra-muscular fat)	NCBI	19
SW286	UniSTS:252192	4	78.3	78716224	78716297	74	GGTGACAGAATACAGTTTTCCC GATCTTCTTATTGGCCGTGTG	62	74-94	MCOLOR(Minolta, a); putative olfactory receptor 10K3	NCBI	20
SW856	UniSTS:252156	4	130.1	109206330	109206538	209	AGGGGGTGGGTGATTGTG AACTTCCCCATGCTGCTG	62	160-200	Carcass weight	NCBI	21
SW491	UniSTS:251953	5	31.5	504662	504834	173	TTTAAGCCACTGCACCAGG CAGGGAACTCCTCATAGTCCC	60	154-174	PRV(Resistance/susceptibility to pseudorabies); Last lumbar backfat	NCBI	22
DK	UniSTS:251896	5	72.3	8122323	8122455	133	CTATTCCCCATGAACCCATG TCCCAGTGGGAAAAAAAAGT	58	110-132	Diacylglycerol kinase; Silver	NCBI	23
SW967	UniSTS:252218	5	145.9	37298902	37299000	99	AGCAGACTGTTCATCTGTTCAG GGGGCAGCTGAAAAGTCC	58	95-115	MCOLORL(Hormel loin Minolta); Last-rib back fat; Average backfat; body weight at 3 and 13 weeks of age	NCBI	24
SW973	UniSTS:251997	6	18.6	-	-	-	CACAGTTTGCATTGTGGGTC TAGGGGGCCCGTAAAGTC	62	171-183	-	NCBI	25
SW2419	UniSTS:252602	6	161.4	-	-	-	AGGGCGTGCTCTTCTAACTG TGACTCAGCATCTCCTGCC	58	115-141	IMF(Intramuscular fat): Early growth rate	NCBI	26
SW607	UniSTS:251888	6	165.7	-	-	-	AGCACCTGGCACAGGATAAC GCAAGAACTGGTTTTCCAGC	58	152-172	Moisture Content	NCBI	27
SWR1343	UniSTS:252370	7	12.2	5863476	5863596	121	GATCTGGCATTCCATGTGC CTCCTAGCCTGGGAACCC	60	122-142	Carcass length; Average backfat	NCBI	28
SW1354	UniSTS:252456	7	22.3	-	-	-	GAGCCAGATTAATGCAGTTGC CCTAGTCCCGAGCGGTAATC	58	104-172	Average backfat; Hot carcass weight; Back fat thickness; Eye Muscle depth; Fat androstenone level at 100, 120, 140 and 160 days of age;	NCBI	29
SW252	UniSTS:251967	7	99.4	-	-	-	CTCTGGGTCCATCCATTTTG TTATGATGCAAAACATGGAAGC	62	149-179	MCOLOR; Average daily gain; Carcass length; Belly percentage; Thoracic Vertebra number; pH for Longissmus Dorsi	NCBI	30
SW905	UniSTS:252240	8	20.8	-	-	-	ATCCCAACCTTCTTTCAAAGG TCCAGTGGCAGAACAACATG	60	125-174	Early growth rate; Life growth rate; Loin and belly cut	NCBI	31
OPN	UniSTS:251897	8	120.2	-	-	-	CCAATCCTATTCACGAAAAAGC CAACCCACTTGCTCCCAC	58	100-166	Osteopontin (opn) gene, opn-[TG] repeat allele, promoter region	NCBI	32
SW1980	UniSTS:252715	8	126.1	-	-	-	GCTTCTGTATGCCACAGCTG CCCCCATTTGAACAATGAAG	62	174-200	-	NCBI	33
SW983	UniSTS:252123	9	4.0	-	-	-	GCAGTCCCACTCTTAGGTATATATCC ATAATGCTGCTATGAACACTGTAGTG	60	95-121	IMF(Intramuscular fat); Moisture	NCBI	34
SW21	UniSTS:252276	9	15.1	-	-	-	CGATTTTAATGTGCAGCCG CAGGAGCTGACCTATCTGGTG	60	123-140	-	NCBI	35
S0024	UniSTS:252330	9	27.4	-	-	-	AAAGAAGGAAAGAACTGATA ATGGAGGATAATGTGAAAAA	55	166-191	Leaf fat weight	NCBI	36
SW1349	UniSTS:252455	9	142.5	-	-	-	ATTTAATGTTTTCATTGTGCCG CTTACATGATGCCCAAACTGG	58	127-151	PRV(Resistance/susceptibility to pseudorabies)	NCBI	37
SW1041	UniSTS:252105	10	67.5	-	-	-	ATCAGAAAATGGTCAACAGTTCA GGAGAATTCCCAAAGTTAATAGG	58	94-103	Number of nipples; Early growth rate	NCBI	38
SW920	UniSTS:252062	10	86.3	-	-	-	CATGGAGCTGAACTTGCAAA ATCAAGCCCAACTTAAGAATACA	60	142-150	Number of nipples	NCBI	39
SWR67	UniSTS:251905	10	122.0	-	-	-	GTCCTCATGGAGACTAGTTGGG TCCATGCCATGGACACAG	60	125-147	-	NCBI	40
SW2067	UniSTS:252667	10	128.0	-	-	-	GAAGAAATTAAATGCACGTCCC TTGCTGCTTGTGCCTTTG	55	108-136	-	NCBI	41
SW1486	UniSTS:252476	11	7.8	6414540	6414631	92	CCCACTGTTTCTTACACATTGC ACTCCAAAGCCCACATTCTG	58	88-94	-	NCBI	42
SW2413	UniSTS:252599	11	84.9	-	-	-	AAAGACCGGGTCCTCCTG CATTCCATCCGCCCTACC	62	128-162	-	NCBI	43
S0143	UniSTS:252766	12	6.6	-	-	-	ACTCACAGCTTGTCCTGGGTGT CAGTCAGCAGGCTGACAAAAAC	58	148-162	FA-C18-3 Linolenic acid percentage	NCBI	44
SW943	UniSTS:252103	12	62.8	-	-	-	AGGAGGACTAGAGCGCCTG AGAGAGGCCAAGAATAGAACCC	62	118-132	FA-C18-3 Linolenic acid percentage	NCBI	45
SWC62	UniSTS:252284	12	84.2	-	-	-	CCAGGGTGTTGCTTTAGGTC GGCTCACCTTGGCACATG	58	142-162	Meat color score	NCBI	46
S0147	UniSTS:252637	12	89.9	-	-	-	AGCTGCAGCTCCAGATCATCT GCTGTAAGCAGAGATTAACAC	55	146-174	Meat color score; Meat chewiness	NCBI	47
LOX12A	UniSTS:252353	12	102.5	-	-	-	CTTCAATGGTGCAGTGGGTTG ACTTTAATCAGATACAGAAGTTGG	58	143-155	ALOX15(Arachidonate 15-lipoxygenase)	NCBI	48
SWR1021	UniSTS:252000	12	113.1	-	-	-	CGCCACAAGTGAACTCC CCGCGGGTCCAGCTATAG	60	91-118	-	NCBI	49
SW1378	UniSTS:252378	13	19.1	3641602	3641693	92	ACCACACGTCTAATTGAAGAGC TAAATCACAACTTTTGGGGATG	60	92-103	Transcribed locus	NCBI	50
SWR950	UniSTS:252215	13	69.6	36073974	36074131	158	CTCCATGTGCTGCAGGTG CCAAACACTCCCCTGCAC	62	145-163	GRAM domain-containing protein 1C	NCBI	51
SW520	UniSTS:251873	13	74.4	-	-	-	GCCACCGGTGTGACTCTAAA CTTTTCCCAAGTTCACTTAGCA	62	102-124	-	NCBI	52
SW2097	UniSTS:252871	13	121.2	-	-	-	TGACTTTGCTTAGCCTCTGTTC TTCCCTATGCTGCAGATGTG	62	106-132	-	NCBI	53
SW857	UniSTS:252180	14	7.4	6061240	6061392	153	TGAGAGGTCAGTTACAGAAGACC GATCCTCCTCCAAATCCCAT	58	145-159	Average backfat (ultrasound); MCOLOR-A; Drip loss; Bone morphogenetic protein 1 precursor (BMP-1)	NCBI	54
SW2515	UniSTS:252787	14	108.7	135413038	135413137	100	CCATCTCATCCAGAAACATCC AGGATGCTGAGGTGTTAGGC	60	90-108	-	NCBI	55
KS169	UniSTS:253282	15	3.0	-	-	-	GGTGATAGGGACTTTCCAAGC TTACTGGGTTGGGAGGAGG	60	166-182	-	NCBI	56
KS135	UniSTS:253234	15	102.5	-	-	-	AGCAGTAACTCTTTATCTTCATGCC TTAAGAATAGTTCTGGGCAGGG	58	118-146	Ovulation rate	NCBI	57
SWR312	UniSTS:251919	15	119.9	-	-	-	ATCCGTGCGTGTGTGCAT CTGGTGGCTACAGTTCCGAT	60	127-141	-	NCBI	58
SW813	UniSTS:252203	16	6.0	-	-	-	AGTTGATTTAAAATGTTGTGCCA AATATTTCAAAAAAAGGAATGCG	58	98-110	-	NCBI	59
SW18	UniSTS:252274	16	93.2	-	-	-	TTGTTCCCCACGTTCCTG CTGGCCTGGGAACTACCC	55	88-99	-	NCBI	60
SWR1133	UniSTS:252342	17	30.4	-	-	-	TGGGATTTGTTACCACTGAGC TCCATGGGTGAAAAAAAGATG	62	131-135	Meat juiciness score	NCBI	61
SW2431	UniSTS:252606	17	94.0	-	-	-	CTTCCCAGGATGTTGTCTAAAC CATGGTGCACACTTAGTGGG	60	151-176	-	NCBI	62
SW1808	UniSTS:252551	18	0.0	-	-	-	CCAAAAAAGTGGACTGTAAGCC TACGGATGGATGGAGACAGG	60	106-149	-	NCBI	63
SW1023	UniSTS:252258	18	5.0	-	-	-	AACCTGCTGAGCCACAGTG GCAAGTACCCAATCTTTTTTCC	60	90-132	Drip loss	NCBI	64
SW787	UniSTS:252202	18	31.6	-	-	-	CTGGAGCAGGAGAAAGTAAGTTC GGACAGTTACAGACAGAAGAAGG	60	150-165	Drip loss; Cook loss (%); pH 24 hours, in semi-membranous muscle	NCBI	65
S0062	UniSTS:252012	18	43.5	-	-	-	AAGATCATTTAGTCAAGGTCACAG TCTGATAGGGAACATAGGATAAAT	55	146-196	Myristic acid	NCBI	66
SWR17	UniSTS:252162	XY	1.1	-	-	-	GTTTAAGCCACCTGGTCTATGG ATCCTGACTTGCTTATGGCTG	58	143-155	-	NCBI	67
SW1325	UniSTS:252364	XY	2.2	-	-	-	CATTCATTTTTGTTCTTCTGCC CACACCTTCGTCTTCACTTCC	58	119-153	-	NCBI	68
SW1411	UniSTS:252386	XY	2.2	-	-	-	GCCAAGGGATTTTTCACATG ATGACCTGGCTGTGAAAAGC	60	78-90	-	NCBI	69
SW2156	UniSTS:252741	XY	2.4	-	-	-	CAAGTGCCCATCAACACTTG TCATCTCTGGGTCCATCTACG	60	157-191	-	NCBI	70
SW980	UniSTS:252243	XY	11.9	-	-	-	CTTCAGTGTAGTCCAAGTGGC GATGTTTTGCTGATAGGAAGGG	55	116-132	-	NCBI	71
SW2470	UniSTS:252615	XY	45.8	-	-	-	TAGTACCTAGGCTTCCCCAGG CTTTGTCTCTCCCTCTCCATAC	58	152-170	Loin eye area; Carcass length	NCBI	72
SW1522	UniSTS:252542	XY	55.4	30676678	30676843	166	CTACCCTCCCAGAGTACCCC TAGCACCTTTCTTTTCATTCCC	60	164-168	Average backfat; Loin eye area; Trimmed whole-sale product / live weight	NCBI	73
SW1426	UniSTS:252393	XY	71.7	-	-	-	TGGTTGTCACAGTTTATTGGG TCCCTATCTTCTAAATGCTAGTAGG	60	90-102	Last lumbar backfat; Trimmed whole-sale product / live weight; Plasma FSH concentration	NCBI	74
SY11	UniSTS:253167	XY	73.0	17876119	17876283	165	TTCACAGCATGACAAAATAGGG TTCAGTCCACCAGAGTTCCC	55	157-169	Androgen receptor	NCBI	75
S0117	UniSTS:253068	XY	74.4	16001110	16001287	178	CAGGAAGCTGAAGCTGAGATTTGA CTGTCAGGGAGCTAGTTTCACTCA	58	163-185	-	NCBI	76
SW1943	UniSTS:252710	XY	87.4	-	-	-	ATTCCCCTTGACACATTAATGG TATGGCTGAGTAGTATTCCATTTTG	62	101-110	Average backfat; Intramuscular fat content; Trimmed whole-sale product / carcass weight; Plasma FSH concentration	NCBI	77
SN218	UniSTS:253121	XY	114.4	39182017	39182113	97	TGGGAACCTCCATATTCTGTG TGAATGCCTACCATGTGTTAGC	62	94-124	MCF.2 cell line derived transforming sequence	NCBI	78
SW2059	UniSTS:252587	XY	119.3	-	-	-	GCTGTCTGGCTTTGGACAG ACTAAGTTCCAGGCACTCAGAC	58	171-191	Trimmed whole-sale product / carcass weight	NCBI	79
SW2588	UniSTS:252917	XY	128.4	-	-	-	TGTCTTCTTCCCCCTCCC AAAGCCTGGTGAGGACCC	58	101-124	First rib, tenth-rib and last-rib back fat	NCBI	80

豬粒線體基因條碼資訊 Pig Mitochondrial DNA Barcode Information

基因簡稱	全名 (UniSTS代號)	粒線體	基因位序 啟始點(bp)	基因位序 末端點(bp)	片段長 (bp)	DNA片段 大小(bp)	NCBI連結
D-loop	D-loop	MT	1	1175	1175	1155-1335	NCBI
Repeat	tacacgtgcg Repeat region	MT	707	836	130	110-290	NCBI
tRNA-Phe	tRNA-Phe	MT	1176	1245	70	70	NCBI
12S rRNA	12S ribosomal RNA	MT	1246	2205	960	960	NCBI
tRNA-Val	tRNA-Val	MT	2206	2273	68	68	NCBI
16S rRNA	16S ribosomal RNA	MT	2274	3844	1571	1571	NCBI
tRNA-Leu	tRNA-Leu	MT	3845	3919	75	75	NCBI
ND1	NADH dehydrogenase subunit 1	MT	3922	4878	957	957	NCBI
tRNA-Ile	tRNA-Ile	MT	4877	4945	69	69	NCBI
tRNA-Gln	tRNA-Gln	MT	4943	5015	73	73	NCBI
tRNA-Met	tRNA-Met	MT	5017	5086	70	70	NCBI
ND2	NADH dehydrogenase subunit 2	MT	5087	6130	1044	1044	NCBI
tRNA-Trp	tRNA-Trp	MT	6129	6196	68	68	NCBI
tRNA-Ala	tRNA-Ala	MT	6203	6270	68	68	NCBI
tRNA-Asn	tRNA-Asn	MT	6272	6346	75	75	NCBI
tRNA-Cys	tRNA-Cys	MT	6379	6444	66	66	NCBI
tRNA-Tyr	tRNA-Tyr	MT	6444	6509	66	66	NCBI
COX1	cytochrome c oxidase subunit I	MT	6511	8055	1545	1545	NCBI
tRNA-Ser	tRNA-Ser	MT	8059	8129	71	71	NCBI
tRNA-Asp	tRNA-Asp	MT	8135	8202	68	68	NCBI
COX2	cytochrome c oxidase subunit II	MT	8203	8890	688	688	NCBI
tRNA-Lys	tRNA-Lys	MT	8891	8957	67	67	NCBI
ATP8	ATPase subunit 8	MT	8959	9162	204	204	NCBI
ATP6	ATPase subunit 6	MT	9120	9800	681	681	NCBI
COX3	cytochrome c oxidase subunit III	MT	9800	10583	784	784	NCBI
tRNA-Gly	tRNA-Gly	MT	10584	10652	69	69	NCBI
ND3	NADH dehydrogenase subunit 3	MT	10653	10998	346	346	NCBI
tRNA-Arg	tRNA-Arg	MT	11000	11068	69	69	NCBI
ND4L	NADH dehydrogenase subunit 4L	MT	11069	11365	297	297	NCBI
ND4	NADH dehydrogenase subunit 4	MT	11359	12736	1378	1378	NCBI
tRNA-His	tRNA-His	MT	12737	12805	69	69	NCBI
tRNA-Ser	tRNA-Ser	MT	12806	12864	59	59	NCBI
tRNA-Leu	tRNA-Leu	MT	12865	12934	70	70	NCBI
ND5	NADH dehydrogenase subunit 5	MT	12935	14755	1821	1821	NCBI
ND6	NADH dehydrogenase subunit 6	MT	14739	15266	528	528	NCBI
tRNA-Glu	tRNA-Glu	MT	15267	15335	69	69	NCBI
CYTB	cytochrome b	MT	15342	16481	1140	1140	NCBI
tRNA-Thr	tRNA-Thr	MT	16482	16549	68	68	NCBI
tRNA-Pro	tRNA-Pro	MT	16550	16613	64	64	NCBI